首页> 外文OA文献 >HTPSELEX—a database of high-throughput SELEX libraries for transcription factor binding sites

【2h】

HTPSELEX—a database of high-throughput SELEX libraries for transcription factor binding sites

机译：HTPSELEX-用于转录因子结合位点的高通量SELEX库的数据库

代理获取

本网站仅为用户提供外文OA文献查询和代理获取服务，本网站没有原文。下单后我们将采用程序或人工为您竭诚获取高质量的原文，但由于OA文献来源多样且变更频繁，仍可能出现获取不到、文献不完整或与标题不符等情况，如果获取不到我们将提供退款服务。请知悉。

页面导航

摘要
著录项
相似文献
相关主题

摘要

HTPSELEX is a public database providing access to primary and derived data from high-throughput SELEX experiments aimed at characterizing the binding specificity of transcription factors. The resource is primarily intended to serve computational biologists interested in building models of transcription factor binding sites from large sets of binding sequences. The guiding principle is to make available all information that is relevant for this purpose. For each experiment, we try to provide accurate information about the protein material used, details of the wet lab protocol, an archive of sequencing trace files, assembled clone sequences (concatemers) and complete sets of in vitro selected protein-binding tags. In addition, we offer in-house derived binding sites models. HTPSELEX also offers reasonably large SELEX libraries obtained with conventional low-throughput protocols. The FTP site contains the trace archives and database flatfiles. The web server offers user-friendly interfaces for viewing individual entries and quality-controlled download of SELEX sequence libraries according to a user-defined sequencing quality threshold. HTPSELEX is available from and .

机译：HTPSELEX是一个公共数据库，可访问来自高通量SELEX实验的原始数据和派生数据，这些实验旨在表征转录因子的结合特异性。该资源主要用于为有兴趣从大量结合序列建立转录因子结合位点模型的计算生物学家提供服务。指导原则是提供与此目的相关的所有信息。对于每个实验，我们尝试提供有关所用蛋白质材料的准确信息，湿实验室方案的详细信息，测序跟踪文件的档案，组装的克隆序列（连接物）以及体外选择的蛋白质结合标签的完整集合。此外，我们提供内部衍生的结合位点模型。 HTPSELEX还提供通过常规低吞吐量协议获得的相当大的SELEX库。 FTP站点包含跟踪存档和数据库平面文件。 Web服务器提供了用户友好的界面，用于根据用户定义的测序质量阈值查看单个条目和SELEX序列库的质量控制下载。 HTPSELEX可从和获得。

著录项

作者
Jagannathan, Vidhya; Roulet, Emmanuelle; Delorenzi, Mauro; Bucher, Philipp;
展开▼
作者单位

展开▼
年度 2006
总页数
原文格式 PDF
正文语种 {"code":"en","name":"English","id":9}
中图分类

相似文献

外文文献
中文文献
专利

1. HTPSELEX—a database of high-throughput SELEX libraries for transcription factor binding sites [J] . Emmanuelle Roulet, Mauro Delorenzi, Philipp Bucher, Nucleic acids research . 2006,第suppla1期

机译：HTPSELEX-高通量SELEX库的转录因子结合位点数据库
2. Genome-wide transcription factor binding site/promoter databases for the analysis of gene sets and co-occurrence of transcription factor binding motifs [J] . Srinivas Veerla, Markus Ringnér, Mattias H?glund BMC Genomics . 2010,第1期

机译：全基因组转录因子结合位点/启动子数据库，用于分析基因组和转录因子结合基序的共现
3. SELMAP - SELEX affinity landscape MAPping of transcription factor binding sites using integrated microfluidics [J] . Dana Chen, Yaron Orenstein, Rada Golodnitsky, Scientific reports. . 2016,第4期

机译：SELMAP - 使用集成微流体的转录因子结合位点的SELEX亲和景观映射
4. Simultaneous Identification for Synergistic Transcription Factors and their Transcription Factor Binding Sites [C] . Tsai Zing Tsung-Yeh, Huang Grace Tzu-Wei, Tsai Huai-Kuang 2011 International Conference on Complex, Intelligent and Software Intensive Systems . 2011

机译：协同转录因子及其转录因子结合位点的同时鉴定
5. Iron-Sulfur cofactor mediated recognition of two classes of binding sites by the Escherichia coli transcription factor IscR. [D] . Teter, Sarah Jean. 2013

机译：铁-硫辅因子介导大肠杆菌转录因子IscR对两类结合位点的识别。
6. HTPSELEX—a database of high-throughput SELEX libraries for transcription factor binding sites [O] . Vidhya Jagannathan, Emmanuelle Roulet, Mauro Delorenzi, 2006

机译：HTPSELEX-高通量SELEX库的转录因子结合位点数据库
7. Genome-wide transcription factor binding site/promoter databases for the analysis of gene sets and co-occurrence of transcription factor binding motifs [O] . Srinivas Veerla, Markus Ringnér, Mattias Höglund 2010

机译：全基因组转录因子结合位点/启动子数据库，用于分析基因组和转录因子结合基序的共现

HTPSELEX—a database of high-throughput SELEX libraries for transcription factor binding sites

摘要

著录项

相似文献

相关主题

期刊订阅